PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14808_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 101aa    MW: 10894.2 Da    PI: 10.7403
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14808_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16147555
          AP2  5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 GVr+++ +g+W+A Irdp+    + +r++lg+f ta +Aa a+++a++k++g
  RrC14808_p1  1 GVRQRP-WGKWAAVIRDPK----KaARVWLGTFETAGDAALAYDRAALKFKG 47
                 9*****.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-28156IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-20156IPR016177DNA-binding domain
SMARTSM003801.7E-29161IPR001471AP2/ERF domain
CDDcd000186.01E-28156No hitNo description
PROSITE profilePS5103221.812155IPR001471AP2/ERF domain
PfamPF008473.7E-10147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
GVRQRPWGKW AAVIRDPKKA ARVWLGTFET AGDAALAYDR AALKFKGTKA KLNFPERVQG  60
PSSYVASQSG TDHSPRGGSE LMNSPPPQLG PSTTSSWPNE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-24159867ATERF1
2gcc_A1e-24159867ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893914e-98AC189391.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752414.11e-53PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_013622813.11e-53PREDICTED: ethylene-responsive transcription factor ERF113-like
RefseqXP_013712669.12e-53PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9LYU37e-41EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A078D8S02e-53A0A078D8S0_BRANA; BnaA02g01570D protein
TrEMBLA0A0D3B0X91e-53A0A0D3B0X9_BRAOL; Uncharacterized protein
TrEMBLM4E3Q12e-53M4E3Q1_BRARP; Uncharacterized protein
STRINGBra023404.1-P6e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-32related to AP2 6l